SNP Profiles of NA 26 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
1._NA_26	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AT	_
2._NA_26	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AT	_
3._NA_26	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AT	_
4._NA_26	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AT	_
5._NA_26	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AT	_
6._RUQ_1230	_	_	AC	_	_	_	_	_	AG	_	GG	_	_	_
7._RUQ_1230	_	_	AC	GG	CT	_	AA	CG	AG	CT	_	_	AT	_
8._GC-04-021-2-03	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
9._GC-04-021-2-03	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
10._GC-04-021-2-03	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
11._GC-04-021-2-03	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
12._GC-04-021-2-03	TT	CC	AC	GG	CT	GG	AA	CG	AG	CT	GG	GG	AT	CC
13._RUQ_1230	_	_	AC	_	CT	GG	AA	CG	AG	_	_	GG	AT	CC
14._NA_26	_	_	CC	TT	CT	_	AC	GG	AG	CT	_	_	AT	_
15._RUQ_1230	AA	CC	AC	CC	AG	GG	AA	CG	AG	AG	GG	GG	AT	GG
16._MITC-000034	AA	CC	AC	CC	AG	GG	AA	CG	AG	AG	GG	GG	AT	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	CT	GG	GG	AC	CC	CC	TT	GG	GG	TT	CC	CC
1._NA_26	AA	CC	CT	GG	GG	AC	_	CC	_	GG	_	_	_	CC
2._NA_26	AA	CC	CT	GG	GG	AC	_	CC	_	GG	_	_	_	CC
3._NA_26	AA	CC	CT	GG	GG	AC	_	CC	_	GG	_	_	_	CC
4._NA_26	AA	CC	CT	GG	GG	AC	_	CC	_	GG	_	_	_	CC
5._NA_26	AA	CC	CT	GG	GG	AC	_	CC	_	GG	_	_	_	CC
6._RUQ_1230	_	CC	_	_	GG	AC	CC	_	TT	GG	GG	_	CC	CC
7._RUQ_1230	AA	CC	CT	GG	GG	AC	_	CC	_	GG	_	_	_	CC
8._GC-04-021-2-03	AA	CC	CT	GG	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
9._GC-04-021-2-03	AA	CC	CT	GG	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
10._GC-04-021-2-03	AA	CC	CT	GG	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
11._GC-04-021-2-03	AA	CC	CT	GG	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
12._GC-04-021-2-03	AA	CC	CT	GG	GG	AC	CC	CC	CC	GG	GG	TT	CC	CC
13._RUQ_1230	_	_	_	_	GG	AC	CC	_	_	_	_	_	_	GG
14._NA_26	AA	AC	CC	GG	GG	AC	_	CC	_	GG	_	_	_	CC
15._RUQ_1230	_	CC	_	CC	GG	AC	GG	GG	_	CC	GG	AA	CC	GG
16._MITC-000034	_	CC	_	CC	GG	AC	GG	GG	_	CC	GG	AA	CC	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
1._NA_26	_	CC	AG	_	CT	_	_	_	TT	_	_	TT	CG	AA
2._NA_26	_	CC	AG	_	CT	_	_	_	TT	_	_	TT	CG	AA
3._NA_26	_	CC	AG	_	CT	_	_	_	TT	_	_	TT	CG	AA
4._NA_26	_	CC	AG	_	CT	_	_	_	TT	_	_	TT	CG	AA
5._NA_26	_	CC	AG	_	CT	_	_	_	TT	_	_	TT	CG	AA
6._RUQ_1230	_	_	AG	CC	_	_	_	_	TT	_	_	_	CG	_
7._RUQ_1230	_	CC	AG	_	CT	_	_	_	TT	_	_	TT	CG	AG
8._GC-04-021-2-03	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
9._GC-04-021-2-03	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
10._GC-04-021-2-03	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
11._GC-04-021-2-03	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
12._GC-04-021-2-03	CC	CC	AG	CC	CT	GG	GG	TT	TT	TT	CC	TT	CG	AA
13._RUQ_1230	GG	CC	_	_	CT	_	GG	TT	_	_	CC	_	CG	_
14._NA_26	_	TT	AA	_	CC	_	_	_	GT	_	_	TT	CG	AG
15._RUQ_1230	_	GG	AG	_	AG	CC	GG	_	AA	AA	GG	AA	CG	AA
16._MITC-000034	_	GG	AG	_	AG	CC	GG	_	AA	AA	GG	AA	CG	AA

Input profile: NA_26 RUQ_1230

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._NA_26

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 8 > FP

Dapeng Zhang, 2016

2._NA_26

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 7 > FP

Dapeng Zhang, 2016

3._NA_26

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 6 > FP

Dapeng Zhang, 2016

4._NA_26

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 4 > FP

Dapeng Zhang, 2016

5._NA_26

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4203 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._NA_26 RUQ_1230

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

7._NA_26 RUQ_1230

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

9._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

10._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

11._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

12._NA_26 GC-04-021-2-03

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

13._NA_26 RUQ_1230

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

14._NA_26

72.9 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E352 T5

Dapeng Zhang, 2016

15._NA_26 RUQ_1230

50 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._NA_26 MITC-000034

50 %
36 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484